Monthly Archive for May, 2010

Dr. Craig Venter Shakes the Heavens with Synthetic Life

Image from Popular Science

Image from Popular Science

From Jordan Manalatas, Daily Bruin

If imitation is the highest form of flattery, what then are we to make of Dr. Craig Venter’s recent stab at God? La Jolla’s own mad scientist and crew might just give the Big Guy a run for his money, raising all sorts of moral crises, ethical dilemmas and plumbings of faith.

Team Venter shook the scientific world last week with its announcement of the first successfully synthesized self-replicating bacterium. The bacterium in question – a chimeric copy of Mycoplasma mycoides, genomically synthesized and injected into a recipient cell – has a new nickname (Synthia) and an even louder reputation (the first synthetic life form).

Like Mary Shelley’s pithy Prometheus, our Dr. Venterstein has done what was once the sole domain of the gods – that is, creating new life. A product of synthetic genomic engineering, Synthia is perhaps the first creature since Jesus to lack proper earthly parents.

The DNA she bears was not written by God or nature, but by our Craig and his cronies at the J. Craig Venter Institute, on a computer. Somewhere in her genome lie some James Joyce quotes and an e-mail address, coded in the language of life itself.

To Read More…

James Joyce’s Words Come To Life, And Are Promptly Desecrated

jamesjoyce

From Discover,

This old English major’s heart is warmed by the news that the new synthetic cell carries a line from James Joyce, inscribed in its DNA: “To live, to err, to fall, to triumph, to recreate life out of life.”

What would Joyce have thought if someone had told him that one day the synthesized genome of a goat pathogen would carry his words? I would hope that whoever told him would make sure that he did not think this moment marked his literary immortality. In fact, his deathless prose is probably being desecrated by the relentless erosion of evolution right now.

The scientists who produced the new synthetic cell copied the genome of a microbe, letter for letter, and then inserted the synthetic version into a host cell. To determine that their experiment worked, they needed a way to tell the genomes of their synthetic cells from the natural genomes that were their model. So they inserted “watermarks” into the artificial genome. These sequences of DNA (which spelled out the work of Joyce and others through the genetic code) sit in non-coding regions of the microbe’s DNA. As a result, these watermarks cannot disrupt any essential protein-coding genes or stretches of DNA that are vital for switching genes on and off.

To Read More…

‘Artificial Life’ Breakthrough Announced by Scientists

_47890096_gibson2hr

From Victoria Gill, BBC News

Scientists in the US have succeeded in developing the first living cell to be controlled entirely by synthetic DNA.

The researchers constructed a bacterium’s “genetic software” and transplanted it into a host cell.

The resulting microbe then looked and behaved like the species “dictated” by the synthetic DNA.

The advance, published in Science, has been hailed as a scientific landmark, but critics say there are dangers posed by synthetic organisms.

Some also suggest that the potential benefits of the technology have been over-stated.

But the researchers hope eventually to design bacterial cells that will produce medicines and fuels and even absorb greenhouse gases.

The team was led by Dr Craig Venter of the J Craig Venter Institute (JCVI) in Maryland and California.

To Read More…

Peering Inside the Social Brain

janinesimmons_200

From Siri Carpenter, Science

What makes it possible for people to love, hate, help, or betray one another? How do we decode facial expressions? How do we understand and regulate our own emotional experiences? How do we separate the self from the other, make moral judgments, or decide how much money to save for retirement? What causes some people to turn to religious extremism, heroin, or politics? How does the brain fail those with social deficits such as autism?

Questions like these sit at the junction of our social, emotional, and biological realities, and they drive the young but rapidly growing field of social neuroscience.

Until a few years ago, the idea that science could elucidate the neural foundations of social phenomena as complex as love, friendship, and trust “just basically seemed ludicrous,” says Janine Simmons, chief of the National Institute of Mental Health’s (NIMH’s) program for affect, social behavior, and social cognition. Such “big questions” motivate many scientists to study neuroscience or psychology, she says — but soon they realize that the ability to address such questions is limited by technology. “It’s just recently that people have not been laughed at for taking on these more complex questions,” she says.

To Read More…

Doomsayers Beware, a Bright Future Beckons

18tierney-articleinline1

From John Tierney, The New York Times

Long before “sustainable” became a buzzword, intellectuals wondered how long industrial society could survive. In “The Idea of Decline in Western History,” after surveying predictions from the mid-19th century until today, the historian Arthur Herman identifies two consistently dominant schools of thought.

The first school despairs because it foresees inevitable ruin. The second school is hopeful — but only because these intellectuals foresee ruin, too, and can hardly wait for the decadent modern world to be replaced by one more to their liking. Every now and then, someone comes along to note that society has failed to collapse and might go on prospering, but the notion is promptly dismissed in academia as happy talk from a simpleton. Predicting that the world will not end is also pretty good insurance against a prolonged stay on the best-seller list. Have you read Julian Simon’s “The State of Humanity”? Indur Goklany’s “The Improving State of the World”? Gregg Easterbrook’s “Sonic Boom”?

To Read More…

Who Cares What the Experts Say? – The Democratization of Science

From Terry Newell, The Huffington Post

The difficulty during last year’s Copenhagen Climate Summit in reaching agreement on how to address global warming reflects the contentious political environment on even scientific issues. While worrisome to many, there is an even more troubling lack of agreement right here in America on the core scientific question: is global warming real? While 72% of Americans still think global warming is taking place (Washington Post-ABC News Poll, November 2009), that’s down from 80% a year earlier. Among Republicans, only 54% believe global warming is happening, down from 76% in 2008. Last year’s revelation that some British scientists “massaged” their data for a published paper on the topic has been used by some (who have labeled it “Climategate”) to cast doubt on the entire record of scientific research on global climate change.

Can we no longer trust science and scientists? In a December ABC News -Washington Post poll, 40% of respondents said that they could “trust the things that scientists say about the environment” only “a little or not at all.” Sixty-two percent said that there is “a lot of disagreement” among scientists “about whether or not global warming is happening,” a figure far in excess of the disagreement that actually exists.

To Read More…

Adventures of a Man of Science: Moretti in California

From Elif Batuman, n+1imagephp

Franco Moretti, Graphs, Maps, Trees: Abstract Models for a Literary History. Verso, 2005.

A specter is haunting the academy—the specter of close reading. But don’t worry: as the New York Public Library had the Ghostbusters, the academy has Franco Moretti.

Of course, Moretti is not the first or the only critic to object to close reading. For a good fifteen years, close reading has had a place in the ever-expanding group of things that might be bad for you; experts have shown that close reading will cause you to ignore history, reinforce cultural hegemonies, and “avoid commitment.”

But Moretti’s objections are different. Moretti is a man of the world, and men of the world do not reproach you for trying to avoid commitment. Instead, he finds close reading to be close-minded, superstitious, a fundamentally “theological exercise—very solemn treatment of very few texts taken very seriously.” The problem with the canon, by extension, is not that it is sexist, racist, or classist, but that it is so-provincial.

To Read More…

On the Philosophy of Open Science: Michael Peters

On the Philosophy of Open Science by Michael A. Peters.

This paper arises out of a keynote presentation given at the inaugural Science in Society conference at the University of Cambridge, 5-7 August, 2009. It emerges from some thinking about the nature of openness as a philosophical concept that I develop in a book called The Virtues of Openness: Education, Science and Scholarship in the Digital Age co-authored with Peter Roberts (Paradigm Press, 2009). In terms of my current thinking philosophy of open science rests on seven propositions. I state them baldly here without justification or argument. They are, if you will, ‘observations’ or working hypotheses to be confirmed (or falsified). Each of these propositions has a complex and contested history in philosophy and science and the aim of this paper is to scope the philosophy of open science rather than to defend seven these propositions.
The first part of the paper discusses narratives of openness, focusing on the major philosophical conceptions as they have been developed by Bergson, Popper (Hayek, Soros), Wittgenstein and Eco, teasing out the significance of a Wittgensteinian view of open science. The next section foregrounds ‘technologies of openness’ and their relations to scientific communication before highlighting ‘open science’ as an aspect of an emergent global science system.

Neurocapitalism

From Ewa Hess and Hennric Jokeit, Eurozine

Today, the neurosciences enjoy a similar prestige as psychoanalysis in the twentieth century, write Hennric Jokeit and Ewa Hess. Despite the immense costs for healthcare systems, the fear of depression, dementia and attention deficit disorder legitimises the boom in neuro-psychotropic drugs. In a performance-driven society that confronts the self with its own shortcomings, neuroscience serves an expanding market.

Today, the phenomenology of the mind is stepping indignantly aside for a host of hyphenated disciplines such as neuro-anthropology, neuro-pedagogy, neuro-theology, neuro-aesthetics and neuro-economics. Their self-assurance reveals the neurosciences’ usurpatory tendency to become not only the humanities of science, but the leading science of the twenty-first century. The legitimacy, impetus and promise of this claim derive from the maxim that all human behaviour is determined by the laws governing neuronal activity and the way it is organised in the brain.

To Read More…

The Obama Administration Unveils its Controversial New Plan for the Future of NASA’s Human Spaceflight Program

From Lee Billings, Seed

By virtue of the fact that our ancient evolutionary ancestors were graced with five digits on two forelimbs, we humans now have two five-fingered hands, and most of us count in base-10 notation. Consequently, certain temporal milestones are more appealing than others. For instance, media stories this week commemorated the 40th anniversary of Apollo 13, the legendary lunar mission where three astronauts trapped in a malfunctioning spacecraft were saved through an inspiring combination of luck, ingenuity, and teamwork.wir_4_16_10_sqr

This week also saw the 29th anniversary of the first space shuttle launch, as well as the 49th anniversary of Vostok 1, the flight that took the first human into outer space. But, thanks to our ten-fingered ways we’ll all wait until next year to celebrate. So it goes in any product of biological evolution—seemingly insignificant initial events cast shadows measured in eons. This holds true for technological progress, too: Early decisions in development or deployment become locked in, constraining later features and capabilities. Consider NASA: Today’s extremely expensive and somewhat unsatisfying staples of US human spaceflight, the space shuttle and a space station, can be traced back forty years or so to the aftermath of the Apollo program, when President Nixon chose them as its replacements. The legacy of these choices is that no one has ventured beyond low-Earth orbit ever since.

To Read More…